I'm trying to simulate the sampling of wildlife from a given site. I've made a species list that contains all species that can be found at that site and their associated rarity.
df <- data.frame(rarity = rep(c('common', 'uncommon', 'rare'), each = 2),
species = letters[1:6])
print(df)
rarity species
1 common a
2 common b
3 uncommon c
4 uncommon d
5 rare e
6 rare f
I then create another data set based on the random sampling of rows from df.
df.sampled <- df[sample(1:nrow(df), 30, T),]
The trouble is that this isn't realistic; you're not going to encounter rare species as frequently as uncommon species as common species. For example, 6 out of 10 animals encountered should be common, 3 out of 10 animals should be uncommon, and 1 out of 10 animals shouldbe rare. Here, we're getting all three rarities at equal frequency:
df.matrix <- matrix(NA, ncol = 3, nrow = 1000)
for(i in 1:1000){
df.sampled <- df[sample(1:6, 30, T),]
df.matrix[i,] <- c(table(df.sampled$rarity))
}
apply(df.matrix, 2, mean)
Is there a way I can sample particular rows more often than others given their rarity? I have a feeling qnorm() should be used, but I could be wrong...
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