Java random with low percentage on boolean array (quantile function)

I have a boolean array of aproximattely 10 000 elements. I would like to with rather low,set probability (cca 0,1-0,01) change the value of the elements, while knowing the indexes of changed elements. The code that comes to mind is something like:

int count = 10000;
Random r = new Random();
for (int i = 0; i < count; i++) {
    double x = r.nextDouble();
    if (x < rate) {
            field[i]=!field[i];
            do something with the index...
    }
}

However, as I do this in a greater loop (inevitably), this is slow. The only other possibility that I can come up with is using quantile function (gaussian math), however I have yet to find any free to use code or library to use. Do you have any good idea how to work around this problem, or any library (standard would be best) that could be used?